3D structure

PDB id
4V52 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
3.21 Å

Loop

Sequence
CGUCAG*CGCAACC*GAUGACG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V52_010 not in the Motif Atlas
Homologous match to J3_5J7L_008
Geometric discrepancy: 0.0747
The information below is about J3_5J7L_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_08394.3
Basepair signature
cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

4V52|1|AA|C|1063
4V52|1|AA|G|1064
4V52|1|AA|U|1065
4V52|1|AA|C|1066
4V52|1|AA|A|1067
4V52|1|AA|G|1068
*
4V52|1|AA|C|1107
4V52|1|AA|G|1108
4V52|1|AA|C|1109
4V52|1|AA|A|1110
4V52|1|AA|A|1111
4V52|1|AA|C|1112
4V52|1|AA|C|1113
*
4V52|1|AA|G|1187
4V52|1|AA|A|1188
4V52|1|AA|U|1189
4V52|1|AA|G|1190
4V52|1|AA|A|1191
4V52|1|AA|C|1192
4V52|1|AA|G|1193

Current chains

Chain AA
16S rRNA

Nearby chains

Chain AC
30S ribosomal protein S3
Chain AE
30S ribosomal protein S5
Chain AG
30S ribosomal protein S7
Chain AI
30S ribosomal protein S9
Chain AJ
30S ribosomal protein S10
Chain AN
30S ribosomal protein S14

Coloring options:


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