J3_4V52_048

3D structure

PDB id

4V52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V52_048 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0717

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

4V52|1|DB|C|2091
4V52|1|DB|U|2092
4V52|1|DB|G|2093
*
4V52|1|DB|C|2196
4V52|1|DB|U|2197
4V52|1|DB|A|2198
4V52|1|DB|A|2199
4V52|1|DB|C|2200
*
4V52|1|DB|G|2223
4V52|1|DB|G|2224
4V52|1|DB|A|2225
4V52|1|DB|C|2226
4V52|1|DB|A|2227
4V52|1|DB|G|2228

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DC

50S ribosomal protein L2

Chain DH

50S ribosomal protein L9

Chain DZ

50S ribosomal protein L28