J3_4V52_058

3D structure

PDB id

4V52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

4V52|1|BB|A|504, 4V52|1|BB|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V52_058 not in the Motif Atlas

Homologous match to J3_5J7L_066

Geometric discrepancy: 0.0823

The information below is about J3_5J7L_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V52|1|BB|G|30
4V52|1|BB|C|31
*
4V52|1|BB|G|474
4V52|1|BB|C|475
4V52|1|BB|G|476
4V52|1|BB|A|477
4V52|1|BB|A|478
4V52|1|BB|A|479
4V52|1|BB|A|480
4V52|1|BB|G|481
4V52|1|BB|A|482
4V52|1|BB|A|483
4V52|1|BB|C|484
*
4V52|1|BB|G|496
4V52|1|BB|A|497
4V52|1|BB|G|498
4V52|1|BB|U|499
4V52|1|BB|G|500
4V52|1|BB|A|501
4V52|1|BB|A|502
4V52|1|BB|A|503
4V52|1|BB|A|504
4V52|1|BB|A|505
4V52|1|BB|G|506
4V52|1|BB|A|507
4V52|1|BB|A|508
4V52|1|BB|C|509
4V52|1|BB|C|510

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BQ

50S ribosomal protein L20

Chain BS

50S ribosomal protein L22

Chain BU

50S ribosomal protein L24