3D structure

PDB id
4V53 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.
Experimental method
X-RAY DIFFRACTION
Resolution
3.54 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCUA
Length
25 nucleotides
Bulged bases
4V53|1|AA|A|975, 4V53|1|AA|G|976, 4V53|1|AA|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V53_007 not in the Motif Atlas
Homologous match to J3_5J7L_006
Geometric discrepancy: 0.1225
The information below is about J3_5J7L_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4V53|1|AA|U|955
4V53|1|AA|U|956
4V53|1|AA|U|957
4V53|1|AA|A|958
4V53|1|AA|A|959
4V53|1|AA|U|960
4V53|1|AA|U|961
4V53|1|AA|C|962
*
4V53|1|AA|G|973
4V53|1|AA|A|974
4V53|1|AA|A|975
4V53|1|AA|G|976
4V53|1|AA|A|977
4V53|1|AA|A|978
4V53|1|AA|C|979
4V53|1|AA|C|980
4V53|1|AA|U|981
4V53|1|AA|U|982
4V53|1|AA|A|983
4V53|1|AA|C|984
*
4V53|1|AA|G|1221
4V53|1|AA|G|1222
4V53|1|AA|C|1223
4V53|1|AA|U|1224
4V53|1|AA|A|1225

Current chains

Chain AA
16S rRNA

Nearby chains

Chain AJ
30S ribosomal protein S10
Chain AM
30S ribosomal protein S13
Chain AN
30S ribosomal protein S14
Chain AS
30S ribosomal protein S19

Coloring options:


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