J3_4V53_015

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V53_015 not in the Motif Atlas

Homologous match to J3_7RQB_001

Geometric discrepancy: 0.0888

The information below is about J3_7RQB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65070.3

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4V53|1|BB|G|30
4V53|1|BB|C|31
*
4V53|1|BB|G|474
4V53|1|BB|C|475
4V53|1|BB|G|476
4V53|1|BB|A|477
4V53|1|BB|A|478
4V53|1|BB|A|479
4V53|1|BB|A|480
4V53|1|BB|G|481
*
4V53|1|BB|C|509
4V53|1|BB|C|510

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BQ

50S ribosomal protein L20

Chain BU

50S ribosomal protein L24