J3_4V53_029
3D structure
- PDB id
- 4V53 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.54 Å
Loop
- Sequence
- UA*UACCGGUGG*CGG
- Length
- 14 nucleotides
- Bulged bases
- 4V53|1|CA|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V53_029 not in the Motif Atlas
- Homologous match to J3_5J7L_003
- Geometric discrepancy: 0.0861
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V53|1|CA|U|672
4V53|1|CA|A|673
*
4V53|1|CA|U|717
4V53|1|CA|A|718
4V53|1|CA|C|719
4V53|1|CA|C|720
4V53|1|CA|G|721
4V53|1|CA|G|722
4V53|1|CA|U|723
4V53|1|CA|G|724
4V53|1|CA|G|725
*
4V53|1|CA|C|732
4V53|1|CA|G|733
4V53|1|CA|G|734
Current chains
- Chain CA
- 16S rRNA
Nearby chains
- Chain CF
- 30S ribosomal protein S6
- Chain CK
- 30S ribosomal protein S11
- Chain CO
- 30S ribosomal protein S15
- Chain CR
- 30S ribosomal protein S18
- Chain CU
- 30S ribosomal protein S21
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