J3_4V53_069
3D structure
- PDB id
- 4V53 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.54 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 4V53|1|DB|U|34, 4V53|1|DB|U|448, 4V53|1|DB|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V53_069 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.0719
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
4V53|1|DB|C|32
4V53|1|DB|C|33
4V53|1|DB|U|34
4V53|1|DB|G|35
*
4V53|1|DB|C|445
4V53|1|DB|G|446
4V53|1|DB|A|447
4V53|1|DB|U|448
4V53|1|DB|A|449
4V53|1|DB|G|450
4V53|1|DB|U|451
4V53|1|DB|G|452
4V53|1|DB|A|453
4V53|1|DB|A|454
4V53|1|DB|C|455
4V53|1|DB|C|456
4V53|1|DB|A|457
4V53|1|DB|G|458
4V53|1|DB|U|459
4V53|1|DB|A|460
4V53|1|DB|C|461
*
4V53|1|DB|G|468
4V53|1|DB|G|469
4V53|1|DB|A|470
4V53|1|DB|A|471
4V53|1|DB|A|472
4V53|1|DB|G|473
Current chains
- Chain DB
- 23S rRNA
Nearby chains
- Chain D2
- 50S ribosomal protein L34
- Chain DE
- 50S ribosomal protein L4
- Chain DQ
- 50S ribosomal protein L20
- Chain DT
- 50S ribosomal protein L23
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