J3_4V53_070

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

UCGACCC*GGAAA*UA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V53_070 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.5711

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

4V53|1|DB|U|1344
4V53|1|DB|C|1345
4V53|1|DB|G|1346
4V53|1|DB|A|1347
4V53|1|DB|C|1348
4V53|1|DB|C|1349
4V53|1|DB|C|1350
*
4V53|1|DB|G|1381
4V53|1|DB|G|1382
4V53|1|DB|A|1383
4V53|1|DB|A|1384
4V53|1|DB|A|1385
*
4V53|1|DB|U|1402
4V53|1|DB|A|1403

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DT

50S ribosomal protein L23