J3_4V54_013

3D structure

PDB id

4V54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

4V54|1|AA|U|1240, 4V54|1|AA|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V54_013 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1318

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

4V54|1|AA|C|1237
4V54|1|AA|A|1238
4V54|1|AA|A|1239
4V54|1|AA|U|1240
4V54|1|AA|G|1241
*
4V54|1|AA|C|1296
4V54|1|AA|G|1297
4V54|1|AA|U|1298
4V54|1|AA|A|1299
4V54|1|AA|G|1300
4V54|1|AA|U|1301
4V54|1|AA|C|1302
4V54|1|AA|C|1303
*
4V54|1|AA|G|1334
4V54|1|AA|U|1335
4V54|1|AA|C|1336
4V54|1|AA|G|1337

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AM

30S ribosomal protein S13