J3_4V55_058

3D structure

PDB id

4V55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

4V55|1|BB|A|504, 4V55|1|BB|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V55_058 not in the Motif Atlas

Homologous match to J3_5J7L_066

Geometric discrepancy: 0.0854

The information below is about J3_5J7L_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V55|1|BB|G|30
4V55|1|BB|C|31
*
4V55|1|BB|G|474
4V55|1|BB|C|475
4V55|1|BB|G|476
4V55|1|BB|A|477
4V55|1|BB|A|478
4V55|1|BB|A|479
4V55|1|BB|A|480
4V55|1|BB|G|481
4V55|1|BB|A|482
4V55|1|BB|A|483
4V55|1|BB|C|484
*
4V55|1|BB|G|496
4V55|1|BB|A|497
4V55|1|BB|G|498
4V55|1|BB|U|499
4V55|1|BB|G|500
4V55|1|BB|A|501
4V55|1|BB|A|502
4V55|1|BB|A|503
4V55|1|BB|A|504
4V55|1|BB|A|505
4V55|1|BB|G|506
4V55|1|BB|A|507
4V55|1|BB|A|508
4V55|1|BB|C|509
4V55|1|BB|C|510

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BQ

50S ribosomal protein L20

Chain BS

50S ribosomal protein L22

Chain BU

50S ribosomal protein L24