J3_4V57_031

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V57_031 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.1843

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.2

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4V57|1|CA|U|943
4V57|1|CA|G|944
4V57|1|CA|G|945
4V57|1|CA|A|946
*
4V57|1|CA|U|1235
4V57|1|CA|A|1236
4V57|1|CA|C|1237
*
4V57|1|CA|G|1337
4V57|1|CA|G|1338
4V57|1|CA|A|1339
4V57|1|CA|A|1340

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CG

30S ribosomal protein S7

Chain CI

30S ribosomal protein S9

Chain CM

30S ribosomal protein S13