J3_4V57_057

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

4V57|1|BB|U|34, 4V57|1|BB|U|448, 4V57|1|BB|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V57|1|BB|C|32
4V57|1|BB|C|33
4V57|1|BB|U|34
4V57|1|BB|G|35
*
4V57|1|BB|C|445
4V57|1|BB|G|446
4V57|1|BB|A|447
4V57|1|BB|U|448
4V57|1|BB|A|449
4V57|1|BB|G|450
4V57|1|BB|U|451
4V57|1|BB|G|452
4V57|1|BB|A|453
4V57|1|BB|A|454
4V57|1|BB|C|455
4V57|1|BB|C|456
4V57|1|BB|A|457
4V57|1|BB|G|458
4V57|1|BB|U|459
4V57|1|BB|A|460
4V57|1|BB|C|461
*
4V57|1|BB|G|468
4V57|1|BB|G|469
4V57|1|BB|A|470
4V57|1|BB|A|471
4V57|1|BB|A|472
4V57|1|BB|G|473

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BE

50S ribosomal protein L4

Chain BQ

50S ribosomal protein L20

Chain BT

50S ribosomal protein L23