J3_4V5A_069

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCCUCAG*CGGAGAG*UAGAAGGG

Length

22 nucleotides

Bulged bases

4V5A|1|BA|G|2334, 4V5A|1|BA|A|2336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5A|1|BA|C|2293
4V5A|1|BA|C|2294
4V5A|1|BA|C|2295
4V5A|1|BA|U|2296
4V5A|1|BA|C|2297
4V5A|1|BA|A|2298
4V5A|1|BA|G|2299
*
4V5A|1|BA|C|2317
4V5A|1|BA|G|2318
4V5A|1|BA|G|2319
4V5A|1|BA|A|2320
4V5A|1|BA|G|2321
4V5A|1|BA|A|2322
4V5A|1|BA|G|2323
*
4V5A|1|BA|U|2332
4V5A|1|BA|A|2333
4V5A|1|BA|G|2334
4V5A|1|BA|A|2335
4V5A|1|BA|A|2336
4V5A|1|BA|G|2337
4V5A|1|BA|G|2338
4V5A|1|BA|G|2339

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B0

50S RIBOSOMAL PROTEIN L27

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BG

50S RIBOSOMAL PROTEIN L5

Chain BS

50S RIBOSOMAL PROTEIN L18