J3_4V5A_075

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUUGACAUGCUAGGGAACC*GGGUGCCCCGCGAGGGGAGCCCUAGCACAGGUG*CCCUUACG

Length

60 nucleotides

Bulged bases

4V5A|1|CA|U|1025, 4V5A|1|CA|U|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5A|1|CA|C|990
4V5A|1|CA|U|991
4V5A|1|CA|U|992
4V5A|1|CA|G|993
4V5A|1|CA|A|994
4V5A|1|CA|C|995
4V5A|1|CA|A|996
4V5A|1|CA|U|997
4V5A|1|CA|G|998
4V5A|1|CA|C|999
4V5A|1|CA|U|1000
4V5A|1|CA|A|1001
4V5A|1|CA|G|1001|||A
4V5A|1|CA|G|1002
4V5A|1|CA|G|1003
4V5A|1|CA|A|1004
4V5A|1|CA|A|1005
4V5A|1|CA|C|1006
4V5A|1|CA|C|1007
*
4V5A|1|CA|G|1022
4V5A|1|CA|G|1023
4V5A|1|CA|G|1024
4V5A|1|CA|U|1025
4V5A|1|CA|G|1026
4V5A|1|CA|C|1027
4V5A|1|CA|C|1028
4V5A|1|CA|C|1029
4V5A|1|CA|C|1030
4V5A|1|CA|G|1030|||A
4V5A|1|CA|C|1030|||B
4V5A|1|CA|G|1030|||C
4V5A|1|CA|A|1030|||D
4V5A|1|CA|G|1031
4V5A|1|CA|G|1032
4V5A|1|CA|G|1033
4V5A|1|CA|G|1034
4V5A|1|CA|A|1035
4V5A|1|CA|G|1036
4V5A|1|CA|C|1037
4V5A|1|CA|C|1038
4V5A|1|CA|C|1039
4V5A|1|CA|U|1040
4V5A|1|CA|A|1041
4V5A|1|CA|G|1042
4V5A|1|CA|C|1043
4V5A|1|CA|A|1044
4V5A|1|CA|C|1045
4V5A|1|CA|A|1046
4V5A|1|CA|G|1047
4V5A|1|CA|G|1048
4V5A|1|CA|U|1049
4V5A|1|CA|G|1050
*
4V5A|1|CA|C|1208
4V5A|1|CA|C|1209
4V5A|1|CA|C|1210
4V5A|1|CA|U|1211
4V5A|1|CA|U|1212
4V5A|1|CA|A|1213
4V5A|1|CA|C|1214
4V5A|1|CA|G|1215

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CN

30S RIBOSOMAL PROTEIN S14