J3_4V5A_085

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAAGG*CCGCAAAC*GUG

Length

16 nucleotides

Bulged bases

4V5A|1|DA|A|1609, 4V5A|1|DA|A|1610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5A|1|DA|C|1306
4V5A|1|DA|A|1307
4V5A|1|DA|A|1308
4V5A|1|DA|G|1309
4V5A|1|DA|G|1310
*
4V5A|1|DA|C|1604
4V5A|1|DA|C|1605
4V5A|1|DA|G|1606
4V5A|1|DA|C|1607
4V5A|1|DA|A|1608
4V5A|1|DA|A|1609
4V5A|1|DA|A|1610
4V5A|1|DA|C|1611
*
4V5A|1|DA|G|1620
4V5A|1|DA|U|1621
4V5A|1|DA|G|1622

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D7

50S RIBOSOMAL PROTEIN L34