J3_4V5B_001

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GCCGUAG*CGC*GGAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5B_001 not in the Motif Atlas

Homologous match to J3_5J7L_049

Geometric discrepancy: 0.2593

The information below is about J3_5J7L_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89095.1

Basepair signature

cWW-F-F-F-tHS-F-cWW-F-cWW

Number of instances in this motif group

1

Unit IDs

4V5B|1|AA|G|10
4V5B|1|AA|C|11
4V5B|1|AA|C|12
4V5B|1|AA|G|13
4V5B|1|AA|U|14
4V5B|1|AA|A|15
4V5B|1|AA|G|16
*
4V5B|1|AA|C|68
4V5B|1|AA|G|69
4V5B|1|AA|C|70
*
4V5B|1|AA|G|106
4V5B|1|AA|G|107
4V5B|1|AA|A|108
4V5B|1|AA|A|109
4V5B|1|AA|C|110

Current chains

Chain AA

5S RIBOSOMAL RNA

Nearby chains

Chain AB

Large subunit ribosomal RNA; LSU rRNA

Chain AO

50S RIBOSOMAL PROTEIN L18

Chain AW

50S RIBOSOMAL PROTEIN L27