J3_4V5B_013

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GGCGG*CUUG*CGCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|BA|G|584
4V5B|1|BA|G|585
4V5B|1|BA|C|586
4V5B|1|BA|G|587
4V5B|1|BA|G|588
*
4V5B|1|BA|C|651
4V5B|1|BA|U|652
4V5B|1|BA|U|653
4V5B|1|BA|G|654
*
4V5B|1|BA|C|754
4V5B|1|BA|G|755
4V5B|1|BA|C|756
4V5B|1|BA|U|757

Current chains

Chain BA

16S RIBOSOMAL RNA

Nearby chains

Chain BH

30S RIBOSOMAL PROTEIN S8

Chain BL

30S RIBOSOMAL PROTEIN S12

Chain BO

30S RIBOSOMAL PROTEIN S15

Chain BQ

30S RIBOSOMAL PROTEIN S17