J3_4V5B_017
3D structure
- PDB id
- 4V5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of PDF binding helix in complex with the ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.74 Å
Loop
- Sequence
- UGGUUUAAUUCG*CGAAGAACCUUAC*GGCUACACA
- Length
- 34 nucleotides
- Bulged bases
- 4V5B|1|BA|A|975, 4V5B|1|BA|G|976, 4V5B|1|BA|A|978, 4V5B|1|BA|A|1227
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V5B|1|BA|U|952
4V5B|1|BA|G|953
4V5B|1|BA|G|954
4V5B|1|BA|U|955
4V5B|1|BA|U|956
4V5B|1|BA|U|957
4V5B|1|BA|A|958
4V5B|1|BA|A|959
4V5B|1|BA|U|960
4V5B|1|BA|U|961
4V5B|1|BA|C|962
4V5B|1|BA|G|963
*
4V5B|1|BA|C|972
4V5B|1|BA|G|973
4V5B|1|BA|A|974
4V5B|1|BA|A|975
4V5B|1|BA|G|976
4V5B|1|BA|A|977
4V5B|1|BA|A|978
4V5B|1|BA|C|979
4V5B|1|BA|C|980
4V5B|1|BA|U|981
4V5B|1|BA|U|982
4V5B|1|BA|A|983
4V5B|1|BA|C|984
*
4V5B|1|BA|G|1221
4V5B|1|BA|G|1222
4V5B|1|BA|C|1223
4V5B|1|BA|U|1224
4V5B|1|BA|A|1225
4V5B|1|BA|C|1226
4V5B|1|BA|A|1227
4V5B|1|BA|C|1228
4V5B|1|BA|A|1229
Current chains
- Chain BA
- 16S RIBOSOMAL RNA
Nearby chains
- Chain BI
- 30S RIBOSOMAL PROTEIN S9
- Chain BJ
- 30S RIBOSOMAL PROTEIN S10
- Chain BM
- 30S RIBOSOMAL PROTEIN S13
- Chain BN
- 30S RIBOSOMAL PROTEIN S14
- Chain BS
- 30S RIBOSOMAL PROTEIN S19
Coloring options: