J3_4V5B_018

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

4V5B|1|BA|U|1212, 4V5B|1|BA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5B_018 not in the Motif Atlas

Homologous match to J3_5J7L_007

Geometric discrepancy: 0.3729

The information below is about J3_5J7L_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

4V5B|1|BA|C|990
4V5B|1|BA|U|991
4V5B|1|BA|U|992
4V5B|1|BA|G|993
*
4V5B|1|BA|C|1045
4V5B|1|BA|A|1046
4V5B|1|BA|G|1047
*
4V5B|1|BA|C|1210
4V5B|1|BA|U|1211
4V5B|1|BA|U|1212
4V5B|1|BA|A|1213
4V5B|1|BA|C|1214
4V5B|1|BA|G|1215

Current chains

Chain BA

16S RIBOSOMAL RNA

Nearby chains

Chain BN

30S RIBOSOMAL PROTEIN S14