J3_4V5B_024

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5B_024 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.1742

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

4V5B|1|CB|C|698
4V5B|1|CB|A|699
4V5B|1|CB|G|700
*
4V5B|1|CB|C|732
4V5B|1|CB|G|733
4V5B|1|CB|A|734
4V5B|1|CB|A|735
4V5B|1|CB|C|736
*
4V5B|1|CB|G|760
4V5B|1|CB|A|761
4V5B|1|CB|U|762
4V5B|1|CB|G|763

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CC

50S RIBOSOMAL PROTEIN L2