J3_4V5B_028

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CUG*CUAACG*CGGACAG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5B_028 not in the Motif Atlas

Homologous match to J3_4WF9_007

Geometric discrepancy: 0.2148

The information below is about J3_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07703.1

Basepair signature

cWW-cWW-tSH-F-F-F-F-F-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

4V5B|1|CB|C|2091
4V5B|1|CB|U|2092
4V5B|1|CB|G|2093
*
4V5B|1|CB|C|2196
4V5B|1|CB|U|2197
4V5B|1|CB|A|2198
4V5B|1|CB|A|2199
4V5B|1|CB|C|2200
4V5B|1|CB|G|2201
*
4V5B|1|CB|C|2222
4V5B|1|CB|G|2223
4V5B|1|CB|G|2224
4V5B|1|CB|A|2225
4V5B|1|CB|C|2226
4V5B|1|CB|A|2227
4V5B|1|CB|G|2228

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CC

50S RIBOSOMAL PROTEIN L2

Chain CH

50S RIBOSOMAL PROTEIN L9

Chain CZ

50S RIBOSOMAL PROTEIN L31