J3_4V5B_029

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CUAAUCC*GGAGGUUAG*CAUAAG

Length

22 nucleotides

Bulged bases

4V5B|1|CB|U|2320, 4V5B|1|CB|U|2334, 4V5B|1|CB|A|2336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|CB|C|2295
4V5B|1|CB|U|2296
4V5B|1|CB|A|2297
4V5B|1|CB|A|2298
4V5B|1|CB|U|2299
4V5B|1|CB|C|2300
4V5B|1|CB|C|2301
*
4V5B|1|CB|G|2315
4V5B|1|CB|G|2316
4V5B|1|CB|A|2317
4V5B|1|CB|G|2318
4V5B|1|CB|G|2319
4V5B|1|CB|U|2320
4V5B|1|CB|U|2321
4V5B|1|CB|A|2322
4V5B|1|CB|G|2323
*
4V5B|1|CB|C|2332
4V5B|1|CB|A|2333
4V5B|1|CB|U|2334
4V5B|1|CB|A|2335
4V5B|1|CB|A|2336
4V5B|1|CB|G|2337

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CA

5S ribosomal RNA; 5S rRNA

Chain CF

50S RIBOSOMAL PROTEIN L5

Chain CO

50S RIBOSOMAL PROTEIN L18

Chain CW

50S RIBOSOMAL PROTEIN L27