3D structure

PDB id
4V5B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of PDF binding helix in complex with the ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.74 Å

Loop

Sequence
CAUC*GUAUG*CAUUUAAAG
Length
18 nucleotides
Bulged bases
4V5B|1|CB|A|2518
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V5B|1|CB|C|2517
4V5B|1|CB|A|2518
4V5B|1|CB|U|2519
4V5B|1|CB|C|2520
*
4V5B|1|CB|G|2545
4V5B|1|CB|U|2546
4V5B|1|CB|A|2547
4V5B|1|CB|U|2548
4V5B|1|CB|G|2549
*
4V5B|1|CB|C|2559
4V5B|1|CB|A|2560
4V5B|1|CB|U|2561
4V5B|1|CB|U|2562
4V5B|1|CB|U|2563
4V5B|1|CB|A|2564
4V5B|1|CB|A|2565
4V5B|1|CB|A|2566
4V5B|1|CB|G|2567

Current chains

Chain CB
23S RIBOSOMAL RNA

Nearby chains

Chain C4
50S RIBOSOMAL PROTEIN L36
Chain CD
50S RIBOSOMAL PROTEIN L3
Chain CK
50S RIBOSOMAL PROTEIN L14

Coloring options:

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