J3_4V5B_033

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CAGGC*GGAAUAUUG*CAGCCAUG

Length

22 nucleotides

Bulged bases

4V5B|1|DA|U|368, 4V5B|1|DA|A|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|DA|C|43
4V5B|1|DA|A|44
4V5B|1|DA|G|45
4V5B|1|DA|G|46
4V5B|1|DA|C|47
*
4V5B|1|DA|G|361
4V5B|1|DA|G|362
4V5B|1|DA|A|363
4V5B|1|DA|A|364
4V5B|1|DA|U|365
4V5B|1|DA|A|366
4V5B|1|DA|U|367
4V5B|1|DA|U|368
4V5B|1|DA|G|369
*
4V5B|1|DA|C|392
4V5B|1|DA|A|393
4V5B|1|DA|G|394
4V5B|1|DA|C|395
4V5B|1|DA|C|396
4V5B|1|DA|A|397
4V5B|1|DA|U|398
4V5B|1|DA|G|399

Current chains

Chain DA

16S RIBOSOMAL RNA

Nearby chains

Chain AH

50S RIBOSOMAL PROTEIN L9

Chain DD

30S RIBOSOMAL PROTEIN S4

Chain DL

30S RIBOSOMAL PROTEIN S12

Chain DP

30S RIBOSOMAL PROTEIN S16