J3_4V5B_037

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5B_037 not in the Motif Atlas

Homologous match to J3_6CZR_024

Geometric discrepancy: 0.231

The information below is about J3_6CZR_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04260.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V5B|1|DA|U|1073
4V5B|1|DA|G|1074
*
4V5B|1|DA|U|1083
4V5B|1|DA|G|1084
4V5B|1|DA|U|1085
4V5B|1|DA|U|1086
4V5B|1|DA|G|1087
*
4V5B|1|DA|C|1098
4V5B|1|DA|G|1099
4V5B|1|DA|C|1100
4V5B|1|DA|A|1101
4V5B|1|DA|A|1102

Current chains

Chain DA

16S RIBOSOMAL RNA

Nearby chains

Chain DB

30S RIBOSOMAL PROTEIN S2

Chain DE

30S RIBOSOMAL PROTEIN S5