J3_4V5B_040

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GUGGAUGC*GCGAAAAG*CCUGAAAC

Length

24 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|AB|G|24
4V5B|1|AB|U|25
4V5B|1|AB|G|26
4V5B|1|AB|G|27
4V5B|1|AB|A|28
4V5B|1|AB|U|29
4V5B|1|AB|G|30
4V5B|1|AB|C|31
*
4V5B|1|AB|G|474
4V5B|1|AB|C|475
4V5B|1|AB|G|476
4V5B|1|AB|A|477
4V5B|1|AB|A|478
4V5B|1|AB|A|479
4V5B|1|AB|A|480
4V5B|1|AB|G|481
*
4V5B|1|AB|C|509
4V5B|1|AB|C|510
4V5B|1|AB|U|511
4V5B|1|AB|G|512
4V5B|1|AB|A|513
4V5B|1|AB|A|514
4V5B|1|AB|A|515
4V5B|1|AB|C|516

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain A0

50S RIBOSOMAL PROTEIN L32

Chain AQ

50S RIBOSOMAL PROTEIN L20

Chain AS

50S RIBOSOMAL PROTEIN L22

Chain AU

50S RIBOSOMAL PROTEIN L24