J3_4V5B_047

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

UCGACCCCUAAGGCGAGG*CGUAGUCGAUGGGAAA*UA

Length

36 nucleotides

Bulged bases

4V5B|1|AB|U|1379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|AB|U|1344
4V5B|1|AB|C|1345
4V5B|1|AB|G|1346
4V5B|1|AB|A|1347
4V5B|1|AB|C|1348
4V5B|1|AB|C|1349
4V5B|1|AB|C|1350
4V5B|1|AB|C|1351
4V5B|1|AB|U|1352
4V5B|1|AB|A|1353
4V5B|1|AB|A|1354
4V5B|1|AB|G|1355
4V5B|1|AB|G|1356
4V5B|1|AB|C|1357
4V5B|1|AB|G|1358
4V5B|1|AB|A|1359
4V5B|1|AB|G|1360
4V5B|1|AB|G|1361
*
4V5B|1|AB|C|1370
4V5B|1|AB|G|1371
4V5B|1|AB|U|1372
4V5B|1|AB|A|1373
4V5B|1|AB|G|1374
4V5B|1|AB|U|1375
4V5B|1|AB|C|1376
4V5B|1|AB|G|1377
4V5B|1|AB|A|1378
4V5B|1|AB|U|1379
4V5B|1|AB|G|1380
4V5B|1|AB|G|1381
4V5B|1|AB|G|1382
4V5B|1|AB|A|1383
4V5B|1|AB|A|1384
4V5B|1|AB|A|1385
*
4V5B|1|AB|U|1402
4V5B|1|AB|A|1403

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain A2

50S RIBOSOMAL PROTEIN L34

Chain AC

50S RIBOSOMAL PROTEIN L2

Chain AT

50S RIBOSOMAL PROTEIN L23