J3_4V5B_061
3D structure
- PDB id
- 4V5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of PDF binding helix in complex with the ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.74 Å
Loop
- Sequence
- GGCCGUAGC*GCGCCGAUGGUAG*CGAGAGUAGGGAACU
- Length
- 37 nucleotides
- Bulged bases
- 4V5B|1|CA|C|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V5B|1|CA|G|9
4V5B|1|CA|G|10
4V5B|1|CA|C|11
4V5B|1|CA|C|12
4V5B|1|CA|G|13
4V5B|1|CA|U|14
4V5B|1|CA|A|15
4V5B|1|CA|G|16
4V5B|1|CA|C|17
*
4V5B|1|CA|G|67
4V5B|1|CA|C|68
4V5B|1|CA|G|69
4V5B|1|CA|C|70
4V5B|1|CA|C|71
4V5B|1|CA|G|72
4V5B|1|CA|A|73
4V5B|1|CA|U|74
4V5B|1|CA|G|75
4V5B|1|CA|G|76
4V5B|1|CA|U|77
4V5B|1|CA|A|78
4V5B|1|CA|G|79
*
4V5B|1|CA|C|97
4V5B|1|CA|G|98
4V5B|1|CA|A|99
4V5B|1|CA|G|100
4V5B|1|CA|A|101
4V5B|1|CA|G|102
4V5B|1|CA|U|103
4V5B|1|CA|A|104
4V5B|1|CA|G|105
4V5B|1|CA|G|106
4V5B|1|CA|G|107
4V5B|1|CA|A|108
4V5B|1|CA|A|109
4V5B|1|CA|C|110
4V5B|1|CA|U|111
Current chains
- Chain CA
- 5S RIBOSOMAL RNA
Nearby chains
- Chain CB
- Large subunit ribosomal RNA; LSU rRNA
- Chain CM
- 50S RIBOSOMAL PROTEIN L16
- Chain CO
- 50S RIBOSOMAL PROTEIN L18
- Chain CV
- 50S RIBOSOMAL PROTEIN L25
- Chain CW
- 50S RIBOSOMAL PROTEIN L27
- Chain CY
- 50S RIBOSOMAL PROTEIN L30
Coloring options: