J3_4V5B_063
3D structure
- PDB id
- 4V5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of PDF binding helix in complex with the ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.74 Å
Loop
- Sequence
- GUGGAUGC*GCGAAAAGAAC*GAGUGAAAAAGAACCUGAAAC
- Length
- 40 nucleotides
- Bulged bases
- 4V5B|1|CB|A|504, 4V5B|1|CB|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V5B|1|CB|G|24
4V5B|1|CB|U|25
4V5B|1|CB|G|26
4V5B|1|CB|G|27
4V5B|1|CB|A|28
4V5B|1|CB|U|29
4V5B|1|CB|G|30
4V5B|1|CB|C|31
*
4V5B|1|CB|G|474
4V5B|1|CB|C|475
4V5B|1|CB|G|476
4V5B|1|CB|A|477
4V5B|1|CB|A|478
4V5B|1|CB|A|479
4V5B|1|CB|A|480
4V5B|1|CB|G|481
4V5B|1|CB|A|482
4V5B|1|CB|A|483
4V5B|1|CB|C|484
*
4V5B|1|CB|G|496
4V5B|1|CB|A|497
4V5B|1|CB|G|498
4V5B|1|CB|U|499
4V5B|1|CB|G|500
4V5B|1|CB|A|501
4V5B|1|CB|A|502
4V5B|1|CB|A|503
4V5B|1|CB|A|504
4V5B|1|CB|A|505
4V5B|1|CB|G|506
4V5B|1|CB|A|507
4V5B|1|CB|A|508
4V5B|1|CB|C|509
4V5B|1|CB|C|510
4V5B|1|CB|U|511
4V5B|1|CB|G|512
4V5B|1|CB|A|513
4V5B|1|CB|A|514
4V5B|1|CB|A|515
4V5B|1|CB|C|516
Current chains
- Chain CB
- 23S RIBOSOMAL RNA
Nearby chains
- Chain C0
- 50S RIBOSOMAL PROTEIN L32
- Chain CQ
- 50S RIBOSOMAL PROTEIN L20
- Chain CS
- 50S RIBOSOMAL PROTEIN L22
- Chain CU
- 50S RIBOSOMAL PROTEIN L24
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