J3_4V5B_066

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

UGGAAGCGU*GCGCGCGAUACAGG*CCGUACA

Length

30 nucleotides

Bulged bases

4V5B|1|CB|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|CB|U|296
4V5B|1|CB|G|297
4V5B|1|CB|G|298
4V5B|1|CB|A|299
4V5B|1|CB|A|300
4V5B|1|CB|G|301
4V5B|1|CB|C|302
4V5B|1|CB|G|303
4V5B|1|CB|U|304
*
4V5B|1|CB|G|313
4V5B|1|CB|C|314
4V5B|1|CB|G|315
4V5B|1|CB|C|316
4V5B|1|CB|G|317
4V5B|1|CB|C|318
4V5B|1|CB|G|319
4V5B|1|CB|A|320
4V5B|1|CB|U|321
4V5B|1|CB|A|322
4V5B|1|CB|C|323
4V5B|1|CB|A|324
4V5B|1|CB|G|325
4V5B|1|CB|G|326
*
4V5B|1|CB|C|336
4V5B|1|CB|C|337
4V5B|1|CB|G|338
4V5B|1|CB|U|339
4V5B|1|CB|A|340
4V5B|1|CB|C|341
4V5B|1|CB|A|342

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CE

50S RIBOSOMAL PROTEIN L4

Chain CL

50S RIBOSOMAL PROTEIN L15

Chain CU

50S RIBOSOMAL PROTEIN L24