J3_4V5B_069

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CAAG*CCCAAACC*GGUG

Length

16 nucleotides

Bulged bases

4V5B|1|CB|A|1609, 4V5B|1|CB|A|1610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|CB|C|1306
4V5B|1|CB|A|1307
4V5B|1|CB|A|1308
4V5B|1|CB|G|1309
*
4V5B|1|CB|C|1605
4V5B|1|CB|C|1606
4V5B|1|CB|C|1607
4V5B|1|CB|A|1608
4V5B|1|CB|A|1609
4V5B|1|CB|A|1610
4V5B|1|CB|C|1611
4V5B|1|CB|C|1612
*
4V5B|1|CB|G|1619
4V5B|1|CB|G|1620
4V5B|1|CB|U|1621
4V5B|1|CB|G|1622

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain C2

50S RIBOSOMAL PROTEIN L34