J3_4V5B_080

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CAAGCG*CGCUAGUAA*UGAAUACG

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|DA|C|936
4V5B|1|DA|A|937
4V5B|1|DA|A|938
4V5B|1|DA|G|939
4V5B|1|DA|C|940
4V5B|1|DA|G|941
*
4V5B|1|DA|C|1342
4V5B|1|DA|G|1343
4V5B|1|DA|C|1344
4V5B|1|DA|U|1345
4V5B|1|DA|A|1346
4V5B|1|DA|G|1347
4V5B|1|DA|U|1348
4V5B|1|DA|A|1349
4V5B|1|DA|A|1350
*
4V5B|1|DA|U|1372
4V5B|1|DA|G|1373
4V5B|1|DA|A|1374
4V5B|1|DA|A|1375
4V5B|1|DA|U|1376
4V5B|1|DA|A|1377
4V5B|1|DA|C|1378
4V5B|1|DA|G|1379

Current chains

Chain DA

16S RIBOSOMAL RNA

Nearby chains

Chain DG

30S RIBOSOMAL PROTEIN S7

Chain DI

30S RIBOSOMAL PROTEIN S9