J3_4V5B_101

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

AC*GAUAAGC*GAUUU

Length

14 nucleotides

Bulged bases

4V5B|1|CB|U|72, 4V5B|1|CB|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5B_101 not in the Motif Atlas

Homologous match to J3_5J7L_037

Geometric discrepancy: 0.1599

The information below is about J3_5J7L_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

4V5B|1|CB|A|56
4V5B|1|CB|C|57
*
4V5B|1|CB|G|70
4V5B|1|CB|A|71
4V5B|1|CB|U|72
4V5B|1|CB|A|73
4V5B|1|CB|A|74
4V5B|1|CB|G|75
4V5B|1|CB|C|76
*
4V5B|1|CB|G|110
4V5B|1|CB|A|111
4V5B|1|CB|U|112
4V5B|1|CB|U|113
4V5B|1|CB|U|114

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain C2

50S RIBOSOMAL PROTEIN L34

Chain CT

50S RIBOSOMAL PROTEIN L23

Chain CX

50S RIBOSOMAL PROTEIN L29