J3_4V5B_102

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

UGAUCUA*UGGGG*CAAUCAAA

Length

20 nucleotides

Bulged bases

4V5B|1|CB|U|686, 4V5B|1|CB|A|789, 4V5B|1|CB|U|790, 4V5B|1|CB|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|CB|U|683
4V5B|1|CB|G|684
4V5B|1|CB|A|685
4V5B|1|CB|U|686
4V5B|1|CB|C|687
4V5B|1|CB|U|688
4V5B|1|CB|A|689
*
4V5B|1|CB|U|773
4V5B|1|CB|G|774
4V5B|1|CB|G|775
4V5B|1|CB|G|776
4V5B|1|CB|G|777
*
4V5B|1|CB|C|787
4V5B|1|CB|A|788
4V5B|1|CB|A|789
4V5B|1|CB|U|790
4V5B|1|CB|C|791
4V5B|1|CB|A|792
4V5B|1|CB|A|793
4V5B|1|CB|A|794

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain C2

50S RIBOSOMAL PROTEIN L34

Chain CC

50S RIBOSOMAL PROTEIN L2

Chain CS

50S RIBOSOMAL PROTEIN L22