J3_4V5C_006

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUACC*GGGCGA

Length

27 nucleotides

Bulged bases

4V5C|1|AA|A|975, 4V5C|1|AA|G|976, 4V5C|1|AA|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5C_006 not in the Motif Atlas

Homologous match to J3_6CZR_062

Geometric discrepancy: 0.1387

The information below is about J3_6CZR_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_59791.1

Basepair signature

cWW-F-F-F-F-F-tSS-F-F-F-F-F-F-F-F-F-F-cWW-F-F-F

Number of instances in this motif group

1

Unit IDs

4V5C|1|AA|U|955
4V5C|1|AA|U|956
4V5C|1|AA|U|957
4V5C|1|AA|A|958
4V5C|1|AA|A|959
4V5C|1|AA|U|960
4V5C|1|AA|U|961
4V5C|1|AA|C|962
*
4V5C|1|AA|G|973
4V5C|1|AA|A|974
4V5C|1|AA|A|975
4V5C|1|AA|G|976
4V5C|1|AA|A|977
4V5C|1|AA|A|978
4V5C|1|AA|C|979
4V5C|1|AA|C|980
4V5C|1|AA|U|981
4V5C|1|AA|U|982
4V5C|1|AA|A|983
4V5C|1|AA|C|984
4V5C|1|AA|C|985
*
4V5C|1|AA|G|1220
4V5C|1|AA|G|1221
4V5C|1|AA|G|1222
4V5C|1|AA|C|1223
4V5C|1|AA|G|1224
4V5C|1|AA|A|1225

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AJ

30S RIBOSOMAL PROTEIN S10

Chain AM

30S RIBOSOMAL PROTEIN S13

Chain AN

30S RIBOSOMAL PROTEIN S14

Chain AS

30S RIBOSOMAL PROTEIN S19

Chain AY

Transfer RNA; tRNA