3D structure

PDB id
4V5C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CGC*GGACUGC*GAGGAAGGAG
Length
20 nucleotides
Bulged bases
4V5C|1|CA|A|1183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V5C_034 not in the Motif Atlas
Homologous match to J3_4LFB_018
Geometric discrepancy: 0.1558
The information below is about J3_4LFB_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17791.2
Basepair signature
cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

4V5C|1|CA|C|1116
4V5C|1|CA|G|1117
4V5C|1|CA|C|1118
*
4V5C|1|CA|G|1155
4V5C|1|CA|G|1156
4V5C|1|CA|A|1157
4V5C|1|CA|C|1158
4V5C|1|CA|U|1159
4V5C|1|CA|G|1160
4V5C|1|CA|C|1161
*
4V5C|1|CA|G|1175
4V5C|1|CA|A|1176
4V5C|1|CA|G|1177
4V5C|1|CA|G|1178
4V5C|1|CA|A|1179
4V5C|1|CA|A|1180
4V5C|1|CA|G|1181
4V5C|1|CA|G|1182
4V5C|1|CA|A|1183
4V5C|1|CA|G|1184

Current chains

Chain CA
16S ribosomal RNA

Nearby chains

Chain AJ
30S RIBOSOMAL PROTEIN S10
Chain CB
30S RIBOSOMAL PROTEIN S2
Chain CG
30S RIBOSOMAL PROTEIN S7
Chain CI
30S RIBOSOMAL PROTEIN S9
Chain CJ
30S RIBOSOMAL PROTEIN S10
Chain CN
30S RIBOSOMAL PROTEIN S14

Coloring options:


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