3D structure

PDB id
4V5C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CGAAG*CGCCAGAGAG*CGUAG
Length
20 nucleotides
Bulged bases
4V5C|1|BA|G|321
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V5C_056 not in the Motif Atlas
Homologous match to J3_9DFE_006
Geometric discrepancy: 0.0765
The information below is about J3_9DFE_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46299.2
Basepair signature
cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
Number of instances in this motif group
3

Unit IDs

4V5C|1|BA|C|297
4V5C|1|BA|G|298
4V5C|1|BA|A|299
4V5C|1|BA|A|300
4V5C|1|BA|G|301
*
4V5C|1|BA|C|316
4V5C|1|BA|G|317
4V5C|1|BA|C|318
4V5C|1|BA|C|319
4V5C|1|BA|A|320
4V5C|1|BA|G|321
4V5C|1|BA|A|322
4V5C|1|BA|G|323
4V5C|1|BA|A|324
4V5C|1|BA|G|325
*
4V5C|1|BA|C|337
4V5C|1|BA|G|338
4V5C|1|BA|U|339
4V5C|1|BA|A|340
4V5C|1|BA|G|341

Current chains

Chain BA
23S Ribosomal RNA

Nearby chains

Chain BF
50S RIBOSOMAL PROTEIN L4
Chain BY
50S RIBOSOMAL PROTEIN L24

Coloring options:


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