J3_4V5C_057

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5C_057 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0934

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V5C|1|BA|G|1424
4V5C|1|BA|G|1425
4V5C|1|BA|G|1426
4V5C|1|BA|A|1427
4V5C|1|BA|C|1428
4V5C|1|BA|G|1429
*
4V5C|1|BA|C|1564
4V5C|1|BA|C|1565
*
4V5C|1|BA|G|1568
4V5C|1|BA|A|1569
4V5C|1|BA|A|1570
4V5C|1|BA|A|1571
4V5C|1|BA|A|1572
4V5C|1|BA|G|1573
4V5C|1|BA|C|1574

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BD

50S RIBOSOMAL PROTEIN L2