J3_4V5D_003
3D structure
- PDB id
- 4V5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- UG*CGCCGAUGG*CAG
- Length
- 14 nucleotides
- Bulged bases
- 4V5D|1|AA|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V5D_003 not in the Motif Atlas
- Homologous match to J3_5J7L_003
- Geometric discrepancy: 0.1073
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V5D|1|AA|U|672
4V5D|1|AA|G|673
*
4V5D|1|AA|C|717
4V5D|1|AA|G|718
4V5D|1|AA|C|719
4V5D|1|AA|C|720
4V5D|1|AA|G|721
4V5D|1|AA|A|722
4V5D|1|AA|U|723
4V5D|1|AA|G|724
4V5D|1|AA|G|725
*
4V5D|1|AA|C|732
4V5D|1|AA|A|733
4V5D|1|AA|G|734
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AF
- 30S RIBOSOMAL PROTEIN S6
- Chain AK
- 30S RIBOSOMAL PROTEIN S11
- Chain AO
- 30S RIBOSOMAL PROTEIN S15
- Chain AR
- 30S RIBOSOMAL PROTEIN S18
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