J3_4V5D_030

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5D_030 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0871

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

4V5D|1|CA|C|936
4V5D|1|CA|A|937
4V5D|1|CA|A|938
4V5D|1|CA|G|939
*
4V5D|1|CA|C|1344
4V5D|1|CA|U|1345
4V5D|1|CA|A|1346
4V5D|1|CA|G|1347
4V5D|1|CA|U|1348
4V5D|1|CA|A|1349
4V5D|1|CA|A|1350
*
4V5D|1|CA|U|1372
4V5D|1|CA|G|1373
4V5D|1|CA|A|1374
4V5D|1|CA|A|1375
4V5D|1|CA|U|1376
4V5D|1|CA|A|1377
4V5D|1|CA|C|1378
4V5D|1|CA|G|1379

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CG

30S RIBOSOMAL PROTEIN S7

Chain CI

30S RIBOSOMAL PROTEIN S9

Chain CW

Transfer RNA; tRNA