J3_4V5D_046

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5D_046 not in the Motif Atlas

Homologous match to J3_7RQB_010

Geometric discrepancy: 0.0749

The information below is about J3_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.3

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

4V5D|1|DA|U|2091
4V5D|1|DA|U|2092
4V5D|1|DA|G|2093
*
4V5D|1|DA|C|2196
4V5D|1|DA|U|2197
4V5D|1|DA|A|2198
4V5D|1|DA|A|2199
4V5D|1|DA|C|2200
*
4V5D|1|DA|G|2223
4V5D|1|DA|G|2224
4V5D|1|DA|A|2225
4V5D|1|DA|C|2226
4V5D|1|DA|A|2227
4V5D|1|DA|G|2228

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D1

50S RIBOSOMAL PROTEIN L28

Chain DD

50S RIBOSOMAL PROTEIN L2

Chain DI

50S RIBOSOMAL PROTEIN L9