J3_4V5D_059

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

4V5D|1|BA|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5D_059 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0601

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V5D|1|BA|C|297
4V5D|1|BA|G|298
4V5D|1|BA|A|299
4V5D|1|BA|A|300
4V5D|1|BA|G|301
*
4V5D|1|BA|C|316
4V5D|1|BA|G|317
4V5D|1|BA|C|318
4V5D|1|BA|C|319
4V5D|1|BA|A|320
4V5D|1|BA|G|321
4V5D|1|BA|A|322
4V5D|1|BA|G|323
4V5D|1|BA|A|324
4V5D|1|BA|G|325
*
4V5D|1|BA|C|337
4V5D|1|BA|G|338
4V5D|1|BA|U|339
4V5D|1|BA|A|340
4V5D|1|BA|G|341

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BF

50S RIBOSOMAL PROTEIN L4

Chain BY

50S RIBOSOMAL PROTEIN L24