J3_4V5E_044
3D structure
- PDB id
- 4V5E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Insights into translational termination from the structure of RF2 bound to the ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- GGA*UUUAAAG*CAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V5E_044 not in the Motif Atlas
- Homologous match to J3_5J7L_040
- Geometric discrepancy: 0.1793
- The information below is about J3_5J7L_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28621.5
- Basepair signature
- cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F
- Number of instances in this motif group
- 7
Unit IDs
4V5E|1|DA|G|1055
4V5E|1|DA|G|1056
4V5E|1|DA|A|1057
*
4V5E|1|DA|U|1081
4V5E|1|DA|U|1082
4V5E|1|DA|U|1083
4V5E|1|DA|A|1084
4V5E|1|DA|A|1085
4V5E|1|DA|A|1086
4V5E|1|DA|G|1087
*
4V5E|1|DA|C|1102
4V5E|1|DA|A|1103
4V5E|1|DA|C|1104
Current chains
- Chain DA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain D9
- 50S RIBOSOMAL PROTEIN L36
- Chain DJ
- 50S RIBOSOMAL PROTEIN L10
- Chain DK
- 50S RIBOSOMAL PROTEIN L11
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