J3_4V5E_069

3D structure

PDB id

4V5E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

4V5E|1|DA|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5E_069 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.073

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V5E|1|DA|C|297
4V5E|1|DA|G|298
4V5E|1|DA|A|299
4V5E|1|DA|A|300
4V5E|1|DA|G|301
*
4V5E|1|DA|C|316
4V5E|1|DA|G|317
4V5E|1|DA|C|318
4V5E|1|DA|C|319
4V5E|1|DA|A|320
4V5E|1|DA|G|321
4V5E|1|DA|A|322
4V5E|1|DA|G|323
4V5E|1|DA|A|324
4V5E|1|DA|G|325
*
4V5E|1|DA|C|337
4V5E|1|DA|G|338
4V5E|1|DA|U|339
4V5E|1|DA|A|340
4V5E|1|DA|G|341

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DF

50S RIBOSOMAL PROTEIN L4

Chain DY

50S RIBOSOMAL PROTEIN L24