J3_4V5F_021

3D structure

PDB id

4V5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the ribosome with elongation factor G trapped in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5F_021 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.1306

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

4V5F|1|BA|G|1344
4V5F|1|BA|C|1345
4V5F|1|BA|G|1346
4V5F|1|BA|G|1347
4V5F|1|BA|G|1348
4V5F|1|BA|A|1349
4V5F|1|BA|C|1350
*
4V5F|1|BA|G|1381
4V5F|1|BA|G|1382
4V5F|1|BA|C|1383
4V5F|1|BA|A|1384
4V5F|1|BA|G|1385
*
4V5F|1|BA|C|1402
4V5F|1|BA|C|1403

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BX

50S RIBOSOMAL PROTEIN L23