J3_4V5F_022

3D structure

PDB id

4V5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the ribosome with elongation factor G trapped in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5F_022 not in the Motif Atlas

Homologous match to J3_7RQB_010

Geometric discrepancy: 0.0802

The information below is about J3_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.3

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

4V5F|1|BA|U|2091
4V5F|1|BA|U|2092
4V5F|1|BA|G|2093
*
4V5F|1|BA|C|2196
4V5F|1|BA|U|2197
4V5F|1|BA|A|2198
4V5F|1|BA|A|2199
4V5F|1|BA|C|2200
*
4V5F|1|BA|G|2223
4V5F|1|BA|G|2224
4V5F|1|BA|A|2225
4V5F|1|BA|C|2226
4V5F|1|BA|A|2227
4V5F|1|BA|G|2228

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B1

50S RIBOSOMAL PROTEIN L28

Chain BD

50S RIBOSOMAL PROTEIN L2