J3_4V5F_053

3D structure

PDB id

4V5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the ribosome with elongation factor G trapped in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

4V5F|1|AA|C|48, 4V5F|1|AA|A|50, 4V5F|1|AA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5F_053 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.0685

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V5F|1|AA|G|46
4V5F|1|AA|C|47
4V5F|1|AA|C|48
4V5F|1|AA|U|49
4V5F|1|AA|A|50
4V5F|1|AA|A|51
4V5F|1|AA|G|52
*
4V5F|1|AA|U|359
4V5F|1|AA|A|360
4V5F|1|AA|G|361
4V5F|1|AA|G|362
4V5F|1|AA|A|363
4V5F|1|AA|A|364
4V5F|1|AA|U|365
4V5F|1|AA|C|366
4V5F|1|AA|U|367
*
4V5F|1|AA|A|393
4V5F|1|AA|G|394
4V5F|1|AA|C|395

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S RIBOSOMAL PROTEIN S12

Chain AP

30S RIBOSOMAL PROTEIN S16

Chain AY

ELONGATION FACTOR G