J3_4V5F_077

3D structure

PDB id

4V5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the ribosome with elongation factor G trapped in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

4V5F|1|DA|A|1609, 4V5F|1|DA|A|1610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5F_077 not in the Motif Atlas

Homologous match to J3_9DFE_011

Geometric discrepancy: 0.123

The information below is about J3_9DFE_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

4V5F|1|DA|C|1306
4V5F|1|DA|A|1307
4V5F|1|DA|A|1308
4V5F|1|DA|G|1309
*
4V5F|1|DA|C|1605
4V5F|1|DA|G|1606
4V5F|1|DA|C|1607
4V5F|1|DA|A|1608
4V5F|1|DA|A|1609
4V5F|1|DA|A|1610
4V5F|1|DA|C|1611
*
4V5F|1|DA|G|1620
4V5F|1|DA|U|1621
4V5F|1|DA|G|1622

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D7

50S RIBOSOMAL PROTEIN L34