Motif J3_47341.1 Version J3_47341.1 of this group appears in releases 4.0 to 4.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4	break		5		6		7		8		9		10	break		11		12		13	1-13	3-6	3-8	4-5	5-8	7-13	8-12	10-11
1	J3_7A0S_007	7A0S	0.1243	1	X	LSU rRNA	C	1319	A	1320	A	1321	G	1322	*	C	1621	G	1622	C	1623	A	1624	A	1626	C	1627	*	G	1636	U	1637	G	1638	cWW	tHS	ntWW	cWW		ntHH	tHW	cWW
2	J3_9DFE_011	9DFE	0.1159	1	1A	LSU rRNA	C	1306	A	1307	A	1308	G	1309	*	C	1605	G	1606	C	1607	A	1608	A	1610	C	1611	*	G	1620	U	1621	G	1622	cWW	tHS	tWW	cWW		tHH	tHW	cWW
3	J3_8B0X_019	8B0X	0.0000	1	a	LSU rRNA	C	1308	A	1309	A	1310	G	1311	*	C	1607	C	1608	C	1609	A	1610	A	1612	C	1613	*	G	1622	U	1623	G	1624	cWW		tWW	cWW		ntHH	tHW	cWW
4	J3_9E6Q_009	9E6Q	0.2785	1	1	LSU rRNA	C	1782	A	1783	A	1784	G	1785	*	C	1426	G	1427	G	1428	A	1429	A	1431	G	1432	*	C	1768	U	1769	G	1770	cWW	tHS	tWW	cWW	ncSs		tHW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAAGCGCAAACGUG	2
CAAGCCCAAACGUG	1
CGGAAAGCUGCAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AAGCAAAU	2
AACCAAAU	1
GGAAAUAA	1

Release history

Release	4.0
Date	2025-08-13
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (4)
Basepair signature: cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F
Heat map statistics: Min 0.11 | Avg 0.16 | Max 0.32

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Coloring options: Nucleotide numbers

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