J3_4V5G_063

3D structure

PDB id

4V5G (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 70S ribosome bound to EF-Tu and tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GACC*GUGGAU*AAUCGUC

Length

17 nucleotides

Bulged bases

4V5G|1|BA|G|2833, 4V5G|1|BA|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5G_063 not in the Motif Atlas

Homologous match to J3_5J7L_048

Geometric discrepancy: 0.3612

The information below is about J3_5J7L_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64069.1

Basepair signature

cWW-tHS-F-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V5G|1|BA|G|2812
4V5G|1|BA|A|2813
4V5G|1|BA|C|2814
4V5G|1|BA|C|2815
*
4V5G|1|BA|G|2831
4V5G|1|BA|U|2832
4V5G|1|BA|G|2833
4V5G|1|BA|G|2834
4V5G|1|BA|A|2835
4V5G|1|BA|U|2836
*
4V5G|1|BA|A|2882
4V5G|1|BA|A|2883
4V5G|1|BA|U|2884
4V5G|1|BA|C|2885
4V5G|1|BA|G|2886
4V5G|1|BA|U|2887
4V5G|1|BA|C|2888

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B5

50S RIBOSOMAL PROTEIN L32

Chain BE

50S RIBOSOMAL PROTEIN L3

Chain BR

50S RIBOSOMAL PROTEIN L17